PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G240600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 1157aa    MW: 127910 Da    PI: 6.5467
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G240600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.1e-23143244199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Seita.4G240600.1.p 143 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDATWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV- 230
                         99*****************************954.4444.48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++++l+++++r+
  Seita.4G240600.1.p 231 -RDEKQQLLLGIRRA 244
                         .5688889****997 PP

2Auxin_resp118.36.4e-39269352183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Seita.4G240600.1.p 269 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 352
                         79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575127No hitNo description
SuperFamilySSF1019362.62E-43132272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-41135258IPR015300DNA-binding pseudobarrel domain
CDDcd100175.85E-19142234No hitNo description
PfamPF023621.1E-20143244IPR003340B3 DNA binding domain
SMARTSM010197.4E-23143245IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97143245IPR003340B3 DNA binding domain
PfamPF065071.1E-33269352IPR010525Auxin response factor
PfamPF023095.0E-1010211108IPR033389AUX/IAA domain
PROSITE profilePS5174528.93910231107IPR000270PB1 domain
SuperFamilySSF542771.37E-710351102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1157 aa     Download sequence    Send to blast
MIKQQQQPAS SVGPQAAAVA AAAASGCEGE KKPPAINSEL WHACAGPLVS LPPAGSLVVY  60
FPQGHSEQVA ASMQKDVDGH VPSYPNLPSK LICLLHNVTL HADPETDEVY AQMTLQPVTS  120
YGKEALQLSE LALKQPRPQT EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA  180
QEIQARDLHD ATWTFRHIYR GQPKRHLLTT GWSLFVSGKR LFAGDSVIFV RDEKQQLLLG  240
IRRANRQPTN ISSSVLSSDS MHIGILAAAA HAAANNSPFT IFYNPRASPT EFVVPFAKYQ  300
KALYGNQISL GMRFRMMFET EELGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESAA  360
GERRNRVSIW EIEPVAAPFF ICPPPFFGSK RPRQLDDESS EMENLLKRAM PWLGEEICIK  420
DPQTQNTIMP GLSLVQWMNM NMQQNSSFAN TAMQSEYLRS LSNPNMQNLG AADLSRQLCL  480
QNQILQQNSI QFSSSKLPQQ MQPVNELSKA TLPLNQLGMG TKLQEQIHDP SNLQRQQQSM  540
NQLLPLSQSQ TNLVQAQVLV QNQMQQQQQP PSMTQNQQPA ASQPQLLPHP QQQQQQQQQQ  600
QQQQQQKLLH QQQQLLLQQQ QLQQQQQNQQ QLNKMAAQVP NLAAQQLQLS DQQLQLQLLQ  660
KLQQQQQSLL SQPAVTLAQL PLIQEQQKLI LDMQQQLSNS QSLSQQQTMP QQSTKVPSQA  720
TPPPPPSMQQ EPQQKVPQKH VGFTDTSHAA IPPTTSVNAI SAAGSSMMAN GAAHSVLTEE  780
IPSCSTSPST ANGNHLAQPI LGRNQQCGMI NNEKLPQSTA PMSIPSSLEA VTGIPRSTKE  840
LPKLNSNVKQ SVMASKLPNT GPIPQNLVNS APPTDYLETA SSATSVWLSQ ADGLLHQGFP  900
MSNFNQQQIF KDAPPETDIQ GTDPSNNALF GINNDGQLGF PMGADAFLSN GIDASKYQNH  960
ISTDIDGNYR IPKDGQQEIS SSMVSQSFGA SDMAFNSIDS GMNDGGFLNR TSWPPAAPLK  1020
RMRTFTKVYK RGAVGRSIDI SHYSGYDELK HALARMFSIE GQLEEQQRIG WKLVYKDHED  1080
DILLLGDDPW EEFVNCVRCI RILSPQEVQQ MSLDGDLGNN ILPNQACSSS DGGNAWRARC  1140
DQNSGNPSTG SYDQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682937345388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966097.10.0PREDICTED: auxin response factor 19-like
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLK3XUY40.0K3XUY4_SETIT; Auxin response factor
STRINGSi005741m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19